FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index15_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 23727416 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4927675 | 2.5632925 | 5.040701 | 1 |
| GAAGA | 5105015 | 2.5628197 | 5.1967154 | 2 |
| CCTGG | 4949125 | 2.5624125 | 6.145462 | 1 |
| CTTCT | 5179815 | 2.543531 | 5.298827 | 1 |
| AAGAA | 5123165 | 2.5164936 | 5.030817 | 2 |
| CTGGA | 4800555 | 2.4417129 | 8.303013 | 1 |
| TCCAG | 4651715 | 2.356515 | 5.264295 | 2 |
| CTCCT | 4609460 | 2.3148654 | 6.798632 | 1 |
| CTGGG | 4366940 | 2.270094 | 7.994871 | 1 |
| CAGGA | 4338250 | 2.2169359 | 5.4427924 | 1 |
| CTTCA | 4484055 | 2.212224 | 5.431724 | 1 |
| CTCCA | 4323725 | 2.18157 | 7.255225 | 1 |
| CCCAG | 4207625 | 2.1799529 | 6.8633566 | 1 |
| CTCTG | 4065315 | 2.0498207 | 6.122645 | 1 |
| CTGAA | 3738180 | 1.8603721 | 5.2433105 | 1 |
| TGGAA | 3718835 | 1.8582002 | 5.125127 | 2 |
| CTCAG | 3455070 | 1.7503059 | 5.823938 | 1 |
| CTTGG | 3233685 | 1.637063 | 5.136102 | 1 |